PmiREN: Plant microRNA Encyclopedia

Gma-MIR171q

Basic info.

miRNA locus ID
Gma-MIR171q

miRNA locus accession
PmiREN006860

Organism
Glycine max

Genomic location
Gma-Gm17 1007454 1007571 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AATA        ------  T  A                       -- G    T     ATGA
    GCTTGAGA      AC TG GATATTGGTGCGGTTCAATCAGA  A GCAG GTTTT    
    ||||||||      || || |||||||||||||||||||||||  | |||| |||||     
    CGGGCTCT      TG AC CTATAACCGTGCCGAGTTAGTTT  T TGTC CAAAA    
            ACTTAA  T  A                       AT G    T     ACCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1309	Gma-MIR171f	Gma-Gm15: 8464103-8464218 -	Glycine max	Gma-MIR171q	Gma-Gm17: 1007454-1007571 +
SY-1313	Gma-MIR171q	Gma-Gm17: 1007454-1007571 +	Medicago truncatula	Mtr-MIR171d	Mtr-chr2: 8261767-8262028 -
SY-1314	Gma-MIR171q	Gma-Gm17: 1007454-1007571 +	Medicago truncatula	Mtr-MIR171j	Mtr-chr4: 55239583-55239700 -
SY-1315	Gma-MIR171q	Gma-Gm17: 1007454-1007571 +	Phaseolus vulgaris	Pvu-MIR171e	Pvu-Chr03: 12716641-12716763 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.01G079500.1	0.5	NA	NA
Glyma.01G136300.1	0.5	NA	NA
Glyma.03G031800.1	0.5	NA	NA
Glyma.11G168219.1	0.5	NA	NA
Glyma.13G204500.1	1.0	NA	NA
Glyma.15G108100.4	1.0	NA	NA
Glyma.01G177200.1	2.0	NA	NA
Glyma.11G065200.1	2.0	1	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018