PmiREN: Plant microRNA Encyclopedia

Gma-MIR171s

Basic info.

miRNA locus ID
Gma-MIR171s

miRNA locus accession
PmiREN006862

Organism
Glycine max

Genomic location
Gma-Gm06 10859280 10859398 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTCTGCG      G     C         C   T    A    TGCATATGAATTTAA
         GAAGTG ACTGG GTGGTATTG TTC GTTC TCTT               
         |||||| ||||| ||||||||| ||| |||| ||||               T
         CTTCAC TGATC CACCATAAC AAG CGAG AGAA               
TATACGTCA      A     T         T   C    C    TAAATTCTCCTACAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3471
Chromosome: Gma-Gm06
Cluster start: 10859280
Cluster end: 10859714

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Gma-MIR171h , Gma-MIR171s	PmiREN006851, PmiREN006862	Gma-Gm06	-	10859280	10859714

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.11G031500.1	NA	NA	2 (1)
Glyma.20G149100.1	NA	NA	2 (2)

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018