Gar-MIR171i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   TTA   A  AAAAATA    C                    C  AAA  - A     AA
      GGA GC       AAAG GATGTTGGTGCGGTTCAATC GA   CG A TTTAC  
      ||| ||       |||| |||||||||||||||||||| ||   || | |||||   
      CCT TG       TTTC CTATAACCGCGCCGAGTTAG CT   GC T AAATG  
TTTAAA   C  -AACGCC    A                    A  ATA  A A     CT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Gar-MIR171i ,   Gar-MIR171j PmiREN007879, PmiREN007880 Gar-NC_030664.1 + 66052348 66053767

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_017782901.1 0.0 NA NA
XM_017782902.1 0.0 NA NA
XM_017768217.1 1.0 NA NA
XM_017781711.1 1.0 NA NA
XM_017781712.1 1.0 NA NA
XM_017787403.1 1.0 NA NA
XM_017750598.1 2.0 NA NA
XM_017789517.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference