Lsi-MIR171c

Basic info.

• miRNA locus ID
• Lsi-MIR171c

• miRNA locus accession
• PmiREN010393

• Organism
• Lagenaria siceraria

• Genomic location
• Lsi-MIMD01000054.1  1836004  1836116  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  CTCGAAAGAGTTTACTCTGA       C       C       AA    T    GA
                      TATTGGC CGGTTCA TCAGATA  TATG TTTA  
                      ||||||| ||||||| |||||||  |||| ||||  A
                      ATAACCG GCCGAGT AGTTTAT  ATAT GAAT  
TTTTATTTTCTCACATAACTCT       T       T       --    T    TC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3675
• Chromosome: Lsi-MIMD01000054.1
• Cluster start: 1836004
• Cluster end: 1839226

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference