Mtr-MIR171i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     AAC   TTCAA   G         C         A      T     T   AA
   GG   CGG     ACG GATATTGGT CGGTTCAAT AGAAAG AAGGC CAA  
   ||   |||     ||| ||||||||| ||||||||| |||||| ||||| |||   
   CC   GCC     TGC CTATAACCG GCCGAGTTA TTTTTC TTCCG GTT  
CTC  -AC   TCTAC   A         T         G      T     T   GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1308 Gma-MIR171a Gma-Gm12: 8443093-8443217 + Medicago truncatula Mtr-MIR171i Mtr-chr4: 17233473-17233584 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Medtr0092s0100.2 1.5 NA NA
Medtr7g026973.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference