Mtr-MIR171n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GTTTG     CC  -------A     C          A         C  A  -  -GA      TGTAT
     GGAAG  GA        AAAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTACA     
     |||||  ||        ||||| |||||||||| ||||||||| || || ||   ||||||      
     CTTTC  CT        TTTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGT     
          TC  AGTTATTA     A          G         A  -  A  ATA      TGAGA

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mtr-MIR171e ,   Mtr-MIR171n PmiREN011405, PmiREN011400 Mtr-chr4 + 47495940 47496048

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1380 Mtr-MIR171n Mtr-chr4: 47495940-47496066 + Phaseolus vulgaris Pvu-MIR171c Pvu-Chr03: 38858475-38858600 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Medtr0092s0100.2 1.0 NA NA
Medtr4g026485.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference