Mtr-MIR171h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AA  AG  A            T   T    A      TAAATAAT     AATG
  GT  AC GGAGTGGTGTTG TTC GCTC TCTTAT        GAATG    
  ||  || |||||||||||| ||| |||| ||||||        |||||    A
  CA  TG CCTCACTATAAC AAG CGAG AGAATA        TTTAC    
TC  CA  A            T   C    C      TTCATTCG     AGTA

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mtr-MIR171g ,   Mtr-MIR171h ,   Mtr-MIR171q PmiREN011406, PmiREN011407, PmiREN011404 Mtr-chr3 - 41952569 41952865

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Medtr5g058860.1 1.0 NA NA
Medtr5g043780.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference