Mtr-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AATTCCCCTC     --TT          T  T        A  C    TT     A
          CGCTT    TGATGTTGGC TG CTCAATCA AT AAAG  CTTGA 
          |||||    |||||||||| || |||||||| || ||||  ||||| A
          GCGAA    ACTATAACCG GC GAGTTAGT TG TTTC  GAGTT 
 CTGAAAATA     TTAT          T  T        C  A    TT     T

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mtr-MIR171a ,   Mtr-MIR171l PmiREN011408, PmiREN011398 Mtr-chr7 - 9888229 9888341

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Medtr0092s0100.2 1.0 NA NA
Medtr4g026485.1 1.0 NA NA
Medtr2g075830.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference