Mtr-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
A             T       C      --    -     ----    -A   TA
 TTGAGATATTGGC TGGTTCA TCAGAA  GAAA CAAAA    AATA  CAC  
 ||||||||||||| ||||||| ||||||  |||| |||||    ||||  |||  C
 AACTTTATAACCG GCCGAGT AGTTTT  TTTT GTTTT    TTGT  GTG  
A             T       T      AG    A     AGTT    AA   TT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mtr-MIR171c ,   Mtr-MIR171k PmiREN011409, PmiREN011397 Mtr-chr5 + 9192852 9192968

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Medtr0092s0100.2 1.5 NA NA
Medtr7g026973.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference