Mtr-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   G   A                       -- G    T      ATAA
    ATG GATATTGGTGCGGTTCAATCAGA  A GCAG GCTTTT    
    ||| |||||||||||||||||||||||  | |||| ||||||     
    TGC CTATAACCGTGCCGAGTTAGTTT  T TGTC CGAAAA    
ATTG   A                       AT G    T      ACTT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mtr-MIR171f ,   Mtr-MIR171j PmiREN011410, PmiREN011396 Mtr-chr4 - 55239583 55239689

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Medtr0092s0100.2 1.5 NA NA
Medtr7g026973.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference