PmiREN: Plant microRNA Encyclopedia

Mac-MIR2118

Basic info.

miRNA locus ID
Mac-MIR2118

miRNA locus accession
PmiREN012145

Organism
Musa acuminata

Genomic location
Mac-chr9 26898991 26899134 -

Comments
A member of family MIR2118

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   CT    C  C    G             -  C   T     -T   -       -          -T     G
     GGCT CC GAAA CCGTGGGGATGGG GG ATC GCAAG  CCA TGCCTGC TCTTCCTGCT  CGGAT 
     |||| || |||| ||||||||||||| || ||| |||||  ||| ||||||| ||||||||||  ||||| C
     TCGA GG CTTT GGTATCCCTACCC CC TAG CGTTC  GGT GCGGACG AGAAGGGCGG  GTCTG 
CTTCC    C  T    -             T  T   C     TT   C       T          TT     T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3816
Chromosome: Mac-chr9
Cluster start: 26898991
Cluster end: 26899322

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR2118 , Mac-MIR482b	PmiREN012145, PmiREN012212	Mac-chr9	-	26898991	26899322

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_AchrUn_randomT13280_001	NA	NA	2 (1)
GSMUA_Achr11T07440_001	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR2118

>