PmiREN: Plant microRNA Encyclopedia

Mac-MIR394b

Basic info.

miRNA locus ID
Mac-MIR394b

miRNA locus accession
PmiREN012175

Organism
Musa acuminata

Genomic location
Mac-chr4 25174935 25175057 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     TT   C      -GTGA      TTC            G  ACATCCA     CACG
 AGGG  GCT GCAGAG     TTGGCA   TGTCCACCTCCA CC       TCTCT    
 ||||  ||| ||||||     ||||||   |||||||||||| ||       |||||    A
 TCTC  CGA CGTCTC     AACCGT   ACGGGTGGAGGT GG       AGAGG    
T    TT   T      AAGTC      CCT            A  CATACGA     AACA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3811
Chromosome: Mac-chr4
Cluster start: 25169931
Cluster end: 25175057

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR171f , Mac-MIR394b	PmiREN012121, PmiREN012175	Mac-chr4	+	25169931	25175057

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_AchrUn_randomT00910_001	0.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR394b

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