Osa-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CTCTCTATGT  GA   G                       A  CTTGT     GAAG
            GG  ACG GATATTGGTGCGGTTCAATCAGA AG     GCTCC    
            ||  ||| ||||||||||||||||||||||| ||     |||||     
            CC  TGC CTATAACCGTGCCGAGTTAGTTT TC     CGGGG    
TCGTCGACGTTT  GC   A                       C  -ACCT     AGCG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1476 Bdi-MIR171c Bdi-Bd5: 24869588-24869706 - Oryza sativa Osa-MIR171c Osa-Chr4: 31713462-31713578 -
SY-1589 Oni-MIR171d Oni-4: 24707982-24708098 - Oryza sativa Osa-MIR171c Osa-Chr4: 31713462-31713578 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

LOC_Os02g44360.1 0.5 NA NA
LOC_Os02g44370.1 0.5 NA NA
LOC_Os04g46860.1 0.5 NA NA
LOC_Os06g01620.1 0.5 NA NA
LOC_Os10g40390.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference