PmiREN: Plant microRNA Encyclopedia

Osa-MIR171g

Basic info.

miRNA locus ID
Osa-MIR171g

miRNA locus accession
PmiREN014222

Organism
Oryza sativa

Genomic location
Osa-Chr7 15636729 15636845 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CAA      --   A       CA        A             AGCAA    AAA   CA
   AGAACA  GGA GACATGG  TGGTATTG CTTGGCTCATCTC     CAGC   CTG  
   ||||||  ||| |||||||  |||||||| |||||||||||||     ||||   |||   
   TCTTGT  TCT CTGTACT  ACTATAAC GAGCCGAGTGGAG     GTCG   GAC  
GTG      TT   C       TC        C             -----    --C   GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1637	Oni-MIRN2213	Oni-7: 10824153-10824269 -	Oryza sativa	Osa-MIR171g	Osa-Chr7: 15636729-15636845 -
SY-1657	Osa-MIR171g	Osa-Chr7: 15636729-15636845 -	Zea mays	Zma-MIR171g	Zma-7: 42496614-42496734 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
LOC_Os03g48050.1	NA	NA	0 (4)
LOC_Os05g26194.1	NA	NA	1 (2)
LOC_Os06g51510.1	3.5	NA	2 (16)
LOC_Os01g60430.1	NA	NA	2 (1)
LOC_Os02g46620.1	NA	NA	2 (1)
LOC_Os03g02590.2	NA	NA	2 (11)
LOC_Os03g09850.1	NA	NA	2 (2)
LOC_Os03g56869.1	NA	NA	2 (2)
LOC_Os05g04630.5	NA	NA	2 (2)
LOC_Os07g08290.1	NA	NA	2 (1)
LOC_Os07g41640.1	NA	NA	2 (1)
LOC_Os08g16930.1	NA	NA	2 (2)
LOC_Os10g05069.1	NA	NA	2 (6)
LOC_Os12g40300.1	NA	NA	2 (3)
LOC_Os03g15680.1	0.5	NA	NA

Mature miRNA conservation

Link

Reference

>Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model. Sci Rep, 2018

>Regulation of rice root development by a retrotransposon acting as a microRNA sponge. Elife, 2017

>Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice. Metallomics, 2015

>Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot, 2010

>OsRecQ1, a QDE-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for double-stranded RNA. Plant J, 2008