PmiREN: Plant microRNA Encyclopedia

Osa-MIR1861j

Basic info.

miRNA locus ID
Osa-MIR1861j

miRNA locus accession
PmiREN014248

Organism
Oryza sativa

Genomic location
Osa-Chr8 15132718 15132843 -

Comments
A member of family MIR1861

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTGTTGC      T     CC       A           A  A  T       TC  TCTA
         ATATTC TAGGC  GGTCTTG GGCAGGAACTG GT GT GGTGAAC  GC    
         |||||| |||||  ||||||| ||||||||||| || || |||||||  ||     
         TATAAG GTCTG  TCGGAAC CTGTCCTTGAC CA CG TCACTTG  TG    
GTGTAAATA      T     AA       C           A  G  C       CT  TTGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3939
Chromosome: Osa-Chr8
Cluster start: 15132522
Cluster end: 15132843

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Osa-MIR1861e , Osa-MIR1861j	PmiREN014244, PmiREN014248	Osa-Chr8	-	15132522	15132843

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
LOC_Os01g08440.1	NA	NA	2 (1)
LOC_Os02g17390.1	NA	NA	2 (3)
LOC_Os03g29770.1	NA	NA	2 (1)
LOC_Os06g02580.1	NA	NA	2 (1)
LOC_Os06g11990.1	NA	NA	2 (2)
LOC_Os10g41470.1	NA	NA	2 (4)
LOC_Os10g41960.1	NA	NA	2 (3)
LOC_Os05g51790.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

>Comprehensive survey and evolutionary analysis of genome-wide miRNA genes from ten diploid Oryza species. BMC Genomics, 2017

>Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice. Metallomics, 2015