Pha-MIR159c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
CGTCCCCTCTC   CC  T           A G    TC     --CT  ATC
           TGG  GC GTTTGGATTGA G GAGC  TGCAT    CG   
           |||  || ||||||||||| | ||||  |||||    ||   C
           ACC  CG TAGGTCTAGCT C TTTG  GCGTG    GC   
  TCGTTGCAT   CC  -           A G    -T     TTAT  CCT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Pha-MIR159a ,   Pha-MIR159c PmiREN016190, PmiREN016192 Pha-Chr05 + 53900374 53904052

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.5G531400.1 1.5 NA NA
PhHAL.1G046000.1 2.0 NA NA
PhHAL.5G119200.1 2.0 NA NA
PhHAL.6G255100.1 2.0 NA NA
PhHAL.7G235700.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference