Pvi-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   GG      T    G   T         T       C     -TG    ---      ATGC
     ATGAAA AGTA CTA GATGTTGGC CGGCTCA TCAGA   ACCA   CGCGGG    
     |||||| |||| ||| ||||||||| ||||||| |||||   ||||   ||||||     
     TACTTT TCAT GAT CTATAACCG GCCGAGT AGTCT   TGGT   GCGCCC    
GAGCA      C    -   T         T       T     TTG    ATA      GTAC

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Pvi-MIR171c ,   Pvi-MIR171d PmiREN016377, PmiREN016378 Pvi-Chr09K - 85285334 85289608

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.6KG089200.1 0.0 0 NA
Pavir.1KG431100.1 0.5 NA NA
Pavir.4KG010200.1 0.5 NA NA
Pavir.4NG003100.1 0.5 NA NA
Pavir.7KG283500.1 0.5 NA NA
Pavir.7NG276500.1 0.5 0 NA
Pavir.9KG317700.1 1.0 NA NA
Pavir.9NG478100.1 1.0 NA NA
Pavir.7KG392000.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference