Pvu-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GATAT    ---     A  ---   C          A         C  A  -  -GA     A   AG
     GGGA   AGCAG GA   AAG GATGTTGGTG GGTTCAATC GA GA CG   TTTAC TGT  
     ||||   ||||| ||   ||| |||||||||| ||||||||| || || ||   ||||| |||   
     CCCT   TCGTT CT   TTC CTATAACCGC CCGAGTTAG CT CT GC   AAATG ACG  
    C    GAG     A  ATA   A          G         A  -  A  ATA     -   AA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1380 Mtr-MIR171n Mtr-chr4: 47495940-47496066 + Phaseolus vulgaris Pvu-MIR171c Pvu-Chr03: 38858475-38858600 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Phvul.008G143400.1 1.0 NA NA
Phvul.010G072700.2 1.0 NA NA
Phvul.010G072900.1 1.0 NA NA
Phvul.002G027500.1 1.5 1 NA
Phvul.008G165200.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference