PmiREN: Plant microRNA Encyclopedia

Peu-MIR171h

Basic info.

miRNA locus ID
Peu-MIR171h

miRNA locus accession
PmiREN017366

Organism
Populus euphratica

Genomic location
Peu-NW_011499968.1 66134 66249 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

T       ----   AG   T  C           C      A     T  -----    GCA
 TTGGAGA    AGC  ACA GG GTGGTATTGAT CGGCTC TCTTC GT     ACTT   
 |||||||    |||  ||| || ||||||||||| |||||| ||||| ||     ||||   T
 AATCTCT    TCG  TGT CT CACTATAACTA GCCGAG AGAAG CG     TGAA   
        TACT   CA   T  -           A      C     T  TTTCT    GAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 4020
Chromosome: Peu-NW_011499968.1
Cluster start: 61746
Cluster end: 66249

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Peu-MIR171h , Peu-MIR171i	PmiREN017366, PmiREN017367	Peu-NW_011499968.1	-	61746	66249

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_011014889.1	1.5	NA	NA
XM_011029272.1	1.5	1	NA
XM_011029277.1	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Peu-MIR171h

>