PmiREN: Plant microRNA Encyclopedia

Ptr-MIR171k

Basic info.

miRNA locus ID
Ptr-MIR171k

miRNA locus accession
PmiREN017551

Organism
Populus trichocarpa

Genomic location
Ptr-Chr12 1811628 1811743 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TTTGGA     AG   T  C           C      AT     GTATTTGCATCA
         GAAGC  ACA GG GTGGTATTGAT CGGCTC  CTTCT            
         |||||  ||| || ||||||||||| ||||||  |||||            G
         CTTCG  TGT CT CACTATAACTA GCCGAG  AGAAG            
ACTCTCTTA     CA   T  -           A      -C     TCGCTTCTTGAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 4025
Chromosome: Ptr-Chr12
Cluster start: 1811628
Cluster end: 1815883

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Ptr-MIR171j , Ptr-MIR171k	PmiREN017549, PmiREN017551	Ptr-Chr12	-	1811628	1815883

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Potri.002G086100.1	1.5	1	NA
Potri.005G175300.1	1.5	1	NA

Mature miRNA conservation

Link

Reference

No reference

Ptr-MIR171k

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