Sit-MIR167c

Basic info.

• miRNA locus ID
• Sit-MIR167c

• miRNA locus accession
• PmiREN018647

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_3  48340846  48341005  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 AGTGGT  -A    A   T           C             -G    GATGTA  TA      TTTG     --     A
       GC  CCAC AGT GGTGAAGCTGC AGCATGATCTGAT  GTAT      TT  CCTCTC    CCTGA  TTGTC 
       ||  |||| ||| ||||||||||| |||||||||||||  ||||      ||  ||||||    |||||  ||||| T
       CG  GGTG TCG CTACTTTGATG TCGTACTGGACTG  TATA      AA  GGGGAG    GGACT  AGCAG 
AGCTACA  AG    G   T           -             AG    -AGGAG  AG      --TA     TA     G

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 4101
• Chromosome: Sit-scaffold_3
• Cluster start: 48338901
• Cluster end: 48341005

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference