Sit-MIR169l

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GAGGGTTTT   -    CT   -         T    T   T   TC    TGATCTTT    GA    A      T  -     AG
           AGT AGCT  GGT AGCCAAGGA GACT GCC GTG  GACC        CCCT  AAGG TCGTCG CG TCATC  
           ||| ||||  ||| ||||||||| |||| ||| |||  ||||        ||||  |||| |||||| || |||||   
           TCA TCGG  CCG TCGGTTCCT CTGA CGG CAC  CTGG        GGGG  TTCC AGTAGC GC GGTAG  
ACTCGCTCCTC   C    -T   A         -    -   C   -T    -------T    --    G      T  T     AC

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Sit-MIR169l ,   Sit-MIR169m ,   Sit-MIR169n PmiREN018667, PmiREN018668, PmiREN018669 Sit-scaffold_6 + 33994504 34001127

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.5G055500.1 1.0 NA NA
Seita.5G055600.1 1.0 1 NA
Seita.9G010300.1 1.0 NA NA
Seita.1G338100.1 2.0 1 NA
Seita.2G383900.1 2.0 NA NA
Seita.3G390000.1 2.0 NA NA
Seita.9G155700.1 2.0 NA NA
Seita.9G367200.1 2.0 NA NA
Seita.9G521100.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference