Spo-MIR169c

Basic info.

• miRNA locus ID
• Spo-MIR169c

• miRNA locus accession
• PmiREN020156

• Organism
• Spirodela polyrhiza

• Genomic location
• Spo-pseudo12  4314791  4314918  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

   GGAAGCGGAGAGT   G  C                      -CC      --AA   -   GAA
                GGA TG AGCCAAGAATGACTTGCCGGCG   CGCCGT    GGC CTG   
                ||| || ||||||||||||||||||||||   ||||||    ||| |||    
                CCT AC TCGGTTCTTGTTGGGCGGCCGC   GTGGCG    CCG GAC   
ACTCTCCTTCTTTCGT   -  A                      CTA      ACCG   C   ACG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 4177
• Chromosome: Spo-pseudo12
• Cluster start: 4314791
• Cluster end: 4320761

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference