Zma-MIR171g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
CAA      --   C       CA        A             T G  CA   CA AAT
   AGAACG  AGG GACATGG  TGGTATTG CTTGGCTCATCTC C CC  CAC  G   
   ||||||  ||| |||||||  |||||||| ||||||||||||| | ||  |||  |    
   TCTTGC  TCT CTGTACT  ACTATAAC GAGCCGAGTGGAG G GG  GTG  C   
GCG      GA   A       TC        C             - A  CC   AA ACC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1638 Oni-MIRN2213 Oni-7: 10824153-10824269 - Zea mays Zma-MIR171g Zma-7: 42496614-42496734 -
SY-1657 Osa-MIR171g Osa-Chr7: 15636729-15636845 - Zea mays Zma-MIR171g Zma-7: 42496614-42496734 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM2G033291_T01 NA NA 2 (1)
GRMZM2G069174_T04 NA NA 2 (1)
GRMZM2G095082_T02 NA NA 2 (1)
GRMZM5G882351_T01 NA NA 2 (1)
GRMZM2G055263_T01 0.5 1 NA
GRMZM5G876576_T01 1.5 NA NA
GRMZM2G051942_T01 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference