Bra-MIR165b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     - T  TT  -    A    A   TT      A           A    CAC     CA        -     ACA
TTAAG C AT  CA GTTG GGGG ATG  GTCTGG CCGAGGATATT TATA   ACATA  TATATATG TTGAT   
||||| | ||  || |||| |||| |||  |||||| ||||||||||| ||||   |||||  |||||||| |||||   A
AGTTC G TA  GT CAAT CCCC TAC  CGGACC GGCTCTTATGA ATAT   TGTAT  ATATATAC AACTA   
     C T  TT  A    C    C   TT      A           G    --A     -A        T     GTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-102 Aly-MIR165a Aly-scaffold_1: 449084-449219 + Brassica rapa Bra-MIR165b Bra-A09: 44653661-44653815 -
SY-487 Ath-MIR165a Ath-Chr1: 78912-79050 - Brassica rapa Bra-MIR165b Bra-A09: 44653661-44653815 -
SY-767 Bol-MIR165a Bol-C05: 281079-281228 + Brassica rapa Bra-MIR165b Bra-A09: 44653661-44653815 -
SY-770 Bol-MIR165b Bol-C08: 41197079-41197233 - Brassica rapa Bra-MIR165b Bra-A09: 44653661-44653815 -
SY-958 Bra-MIR165b Bra-A09: 44653661-44653815 - Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-959 Bra-MIR165b Bra-A09: 44653661-44653815 - Eutrema salsugineum Esa-MIR165 Esa-scaffold_5: 15258725-15258867 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.B01017.1 0.5 NA NA
Brara.D02105.1 0.5 NA NA
Brara.I02808.1 0.5 NA NA
Brara.J01422.1 0.5 NA NA
Brara.K00217.1 0.5 NA NA
Brara.E00955.1 1.5 NA NA
Brara.F00211.1 1.5 NA NA
Brara.F01856.1 1.5 NA NA
Brara.H00179.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference