Bra-MIR319a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GTAGGGATATATATC     A          G      T       CT  G T   A       A    -   AC    C   C  AA  C      --A  AAAT
                 GAGGG GAGCTTCCTT AGTCCA TCAGAGG  GT A ATG TCCAATT GTTT CCG  TCAT CAT CA  TA CGAGTT   CT    
                 ||||| |||||||||| |||||| |||||||  || | ||| ||||||| |||| |||  |||| ||| ||  || ||||||   ||     
                 CTCTC CTCGAGGGAA TCAGGT GGTTTCT  TA T TAC AGGTTAA CAGA GGC  AGTA GTA GT  AT GCTCAG   GA    
TTTAATATCATAATTCT     C          G      T       CT  G -   A       A    T   GT    A   A  AA  T      ATA  ATTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-266 Aly-MIR319a Aly-scaffold_7: 7941292-7941501 - Brassica rapa Bra-MIR319a Bra-A01: 7566510-7566719 +
SY-617 Ath-MIR319a Ath-Chr4: 12352940-12353149 + Brassica rapa Bra-MIR319a Bra-A01: 7566510-7566719 +
SY-853 Bol-MIR319a Bol-C01: 10405597-10405806 + Brassica rapa Bra-MIR319a Bra-A01: 7566510-7566719 +
SY-857 Bol-MIR319b Bol-C07: 43171718-43171928 + Brassica rapa Bra-MIR319a Bra-A01: 7566510-7566719 +
SY-1085 Bra-MIR319a Bra-A01: 7566510-7566719 + Brassica rapa Bra-MIR319d Bra-Scaffold25053: 101079-101289 +
SY-1086 Bra-MIR319a Bra-A01: 7566510-7566719 + Capsella rubella Cru-MIR319b Cru-scaffold_7: 6507492-6507703 -
SY-1087 Bra-MIR319a Bra-A01: 7566510-7566719 + Eutrema salsugineum Esa-MIR319c Esa-scaffold_1: 6999831-7000041 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.A03407.1 1.5 NA NA
Brara.C01651.1 1.5 NA NA
Brara.C02447.1 1.5 NA NA
Brara.E02934.1 1.5 NA NA
Brara.G01291.1 1.5 2 NA
Brara.B00489.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference