Esa-MIR166e

Basic info.

• miRNA locus ID
• Esa-MIR166e

• miRNA locus accession
• PmiREN005613

• Organism
• Eutrema salsugineum

• Genomic location
• Esa-scaffold_2  2890642  2890782  +

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

 GTT     -TTA     A  A      TT  A   C      -   ----   ----AGAAA          CTA
    GCGGT    GGGTT AG GGAATG  GT TGG TCGAGG TCA    TGA         ATTCTTTTGC   
    |||||    ||||| || ||||||  || ||| |||||| |||    |||         ||||||||||    
    CGCTA    TCCAA TC CCTTAC  CG ACC GGCTCC AGT    ACT         TAAGAAAATG   
TTTC     TTTA     C  C      TT  G   A      T   TAAT   AAACAAAAG          CTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3398
• Chromosome: Esa-scaffold_2
• Cluster start: 2890642
• Cluster end: 2892703

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference