PmiREN: Plant microRNA Encyclopedia

Esa-MIR390b

Basic info.

miRNA locus ID
Esa-MIR390b

miRNA locus accession
PmiREN005641

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_2 8867472 8867579 -

Comments
A member of family MIR390

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GT    G     T      AA         G           TGACACACCGA
     AGTA AGAAG AGCTGT  AGCTCAGGA GGATAGCGCCA           
     |||| ||||| ||||||  ||||||||| |||||||||||            
     TCGT TCTTC TCGGTA  TTGAGTCCT CCTATCGCGGT           
TATTT    -     T      CC         A           TATTATATCGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-1110	Bra-MIR390c	Bra-A02: 5742201-5742324 -	Eutrema salsugineum	Esa-MIR390b	Esa-scaffold_2: 8867472-8867579 -
SY-1113	Bra-MIR390d	Bra-A03: 5294939-5295062 -	Eutrema salsugineum	Esa-MIR390b	Esa-scaffold_2: 8867472-8867579 -
SY-1119	Bra-MIR390f	Bra-A10: 11457531-11457654 +	Eutrema salsugineum	Esa-MIR390b	Esa-scaffold_2: 8867472-8867579 -
SY-1244	Cru-MIR390b	Cru-scaffold_8: 9836443-9836569 +	Eutrema salsugineum	Esa-MIR390b	Esa-scaffold_2: 8867472-8867579 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR390b

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