PmiREN: Plant microRNA Encyclopedia

Ath-MIR157a

Basic info.

miRNA locus ID
Ath-MIR157a

miRNA locus accession
PmiREN000641

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr1 24913184 24913316 -

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATTGAGAG   T   ----------TA   T         -A             T  -      A   TTC   GCA
        GCA TGA            GTG TGACAGAAG  TAGAGAGCACAGA GA TGAGAT CAA   GGA   
        ||| |||            ||| |||||||||  ||||||||||||| || |||||| |||   |||    
        TGT ATT            CAC ACTGTCTTC  ATCTCTCGTGTTT CT ATTCTA GTT   TCT   
           T   TCGTTTATTTTC   T         CG             C  C      C   ---   TGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-35	Aly-MIR157a	Aly-scaffold_2: 11818138-11818270 -	Arabidopsis thaliana	Ath-MIR157a	Ath-Chr1: 24913184-24913316 -
SY-421	Ath-MIR157a	Ath-Chr1: 24913184-24913316 -	Brassica rapa	Bra-MIR157c	Bra-A02: 9519858-9519990 +
SY-422	Ath-MIR157a	Ath-Chr1: 24913184-24913316 -	Brassica rapa	Bra-MIR157d	Bra-A07: 21853207-21853339 +
SY-423	Ath-MIR157a	Ath-Chr1: 24913184-24913316 -	Capsella rubella	Cru-MIR157c	Cru-scaffold_2: 8184653-8184783 -
SY-424	Ath-MIR157a	Ath-Chr1: 24913184-24913316 -	Eutrema salsugineum	Esa-MIR157d	Esa-scaffold_9: 9304808-9304939 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G12730.1	3.0	2	2 (2)
AT1G27090.1	NA	NA	2 (1)
AT2G03150.1	NA	NA	2 (1)
AT5G55940.1	NA	NA	2 (3)
AT1G27360.1	1.5	1	NA
AT1G27370.1	1.5	NA	NA
AT2G42200.1	1.5	1	NA
AT3G57920.1	1.5	1	NA
AT5G43270.2	1.5	1	NA
AT1G69170.1	2.0	1	NA
AT2G45990.1	2.0	2	NA
AT5G08620.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

>Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana. PLoS Genet, 2018

>MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci, 2017

>Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs. Bioinformatics, 2006