Ath-MIR160b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TATATATGGAATAATA       C     - C           A  AAAAC        AGT
                  GTCGTGC TGGCT C CTGTATGCCAC AG     ATCGATTT   
                  ||||||| ||||| | ||||||||||| ||     ||||||||   T
                  CAGTACG ACTGA G GACATGCGGTG TC     TAGCTAAA   
TATAATACTATTCGAAAC       A     T A           A  ---AC        ACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-69 Aly-MIR160b Aly-scaffold_7: 11280818-11280940 - Arabidopsis thaliana Ath-MIR160b Ath-Chr4: 9888966-9889088 +
SY-453 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica oleracea Bol-MIR160b Bol-C01: 6058533-6058655 +
SY-454 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica oleracea Bol-MIR160c Bol-C07: 39151232-39151354 +
SY-455 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica rapa Bra-MIR160b Bra-A01: 4672672-4672794 +
SY-456 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica rapa Bra-MIR160f Bra-Scaffold18850: 482412-482534 -
SY-457 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Brassica rapa Bra-MIR160g Bra-A08: 11071954-11072076 -
SY-458 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Capsella rubella Cru-MIR160b Cru-scaffold_7: 8935803-8935927 -
SY-459 Ath-MIR160b Ath-Chr4: 9888966-9889088 + Eutrema salsugineum Esa-MIR160b Esa-scaffold_1: 9864399-9864521 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G77850.1 0.5 NA NA
AT2G28350.1 1.0 NA NA
AT4G30080.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference