PmiREN: Plant microRNA Encyclopedia

Ath-MIR161

Basic info.

miRNA locus ID
Ath-MIR161

miRNA locus accession
PmiREN000653

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr1 17825711 17825840 +

Comments
A member of family MIR161

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TATTGCGTCGATCA     T            C         -CCG   T      TT      A
                ATGCA TGAAAGTGACTA ATCGGGGTT    ATT TTTTTG  CTTCAT 
                ||||| |||||||||||| |||||||||    ||| ||||||  |||||| T
                TACGT ACTTTCACTGAT TGGTCCCAA    TGA AAAGGC  GAAGTA 
TGTTTACGTAACTAAT     C            T         CTAA   C      --      G

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-80	Aly-MIR161	Aly-scaffold_1: 24491101-24491242 +	Arabidopsis thaliana	Ath-MIR161	Ath-Chr1: 17825711-17825840 +
SY-463	Ath-MIR161	Ath-Chr1: 17825711-17825840 +	Capsella rubella	Cru-MIR161	Cru-scaffold_1: 16494853-16494989 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G64583.1	2.0	1	1 (3)
AT1G62910.1	2.0	2	2 (3)
AT1G62930.1	2.0	NA	2 (2)
AT1G63080.1	2.0	NA	2 (2)
AT1G63130.1	2.0	NA	2 (2)
AT1G63400.1	2.0	2	2 (2)
AT1G06580.1	2.5	NA	2 (3)
AT3G13340.1	3.5	NA	2 (1)
AT1G62670.1	4.5	NA	2 (3)
AT1G02305.1	NA	NA	2 (2)
AT1G79260.1	NA	NA	2 (1)

Mature miRNA conservation

Link

Reference

>Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017