Ath-MIR164c

Basic info.

• miRNA locus ID
• Ath-MIR164c

• miRNA locus accession
• PmiREN000659

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr5  9852664  9852787  +

• Comments
• A member of family MIR164

• Confidence level
• 

Secondary strurture and sequence

    AAT   T   TA    T  A     A  C              CACAA    AA     CGGT
       GGG GAG  ACAC TG TGGAG AG AGGGCACGTGCGAA     ATGA  TCGAT    
       ||| |||  |||| || ||||| || ||||||||||||||     ||||  |||||     
       CCC CTC  TGTG AC ACCTC TC TCTTGTGCACGCTT     TACT  AGTTG    
CCCCTCC   T   --    C  A     A  A              --TTA    --     TTCA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Cotton Late Embryogenesis Abundant (LEA2) Genes Promote Root Growth and Confer Drought Stress Tolerance in Transgenic Arabidopsis thaliana. G3, 2018
• >Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017
• >MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci, 2017
• >An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol, 2017
• >HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression. PLoS One, 2017
• >A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids. Front Plant Sci, 2016
• >Regulation of MicroRNA-Mediated Developmental Changes by the SWR1 Chromatin Remodeling Complex. Plant Physiol, 2016
• >A virus-based miRNA suppression (VbMS) system for miRNA loss-of-function analysis in plants. Biotechnol J, 2014
• >Temporal control of leaf complexity by miRNA-regulated licensing of protein complexes. Curr Biol, 2014
• >The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci, 2014
• >Ethylene-insensitive3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis. Plant Cell, 2013
• >The class I protein AtTCP15 modulates plant development through a pathway that overlaps with the one affected by CIN-like TCP proteins. J Exp Bot, 2012
• >Evolution and diverse roles of the CUP-SHAPED COTYLEDON genes in Arabidopsis leaf development. Plant Cell, 2011
• >TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell, 2010
• >Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana. Plant J, 2008
• >TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. Plant Cell, 2007
• >The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell, 2006
• >MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Plant Cell, 2005