Ath-MIR166a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        -  TTTCT TT   A     C  TT      C        T    CTC      T   -   -   --   TCTTTCGATCTAACA
    AGGG GC     C  TTG GGGGA TG  GTCTGG TCGAGGAC CTGG   GCTCTA TCA TGT TGG  ATC               
    |||| ||     |  ||| ||||| ||  |||||| |||||||| ||||   |||||| ||| ||| |||  |||                
    TCCC CG     G  AAC CCCCT AC  CGGACC GGCTTCTG GATT   TGGGAT AGT TAG CTT  GAC               
TTTG    T  ---TT TT   C     T  TT      A        C    --T      T   T   A   TA   TTCCAAGTTAAGCTA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-116 Aly-MIR166b Aly-scaffold_5: 20552771-20552919 + Arabidopsis thaliana Ath-MIR166a Ath-Chr2: 19176108-19176281 +
SY-494 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Arabidopsis thaliana Ath-MIR166b Ath-Chr3: 22922192-22922341 +
SY-495 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Brassica rapa Bra-MIR166f Bra-A09: 37793849-37794001 +
SY-496 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Capsella rubella Cru-MIR166a Cru-scaffold_4: 14490144-14490324 +
SY-497 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Capsella rubella Cru-MIR166b Cru-scaffold_5: 13180987-13181156 +
SY-498 Ath-MIR166a Ath-Chr2: 19176108-19176281 + Eutrema salsugineum Esa-MIR166d Esa-scaffold_19: 528598-528750 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G52150.2 0.5 NA 0 (4)
AT3G48610.1 4.5 NA 2 (1)
AT3G50700.1 NA NA 2 (2)
AT1G30490.1 1.0 NA NA
AT2G34710.1 1.0 NA NA
AT4G32880.1 1.0 NA NA
AT5G60690.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference