Ath-MIR168a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TCT    A   -  C  G      C          T     A       -     ACACAGCCTCGTGACTTT
     CACC TCG GG TC GATTCG TTGGTGCAGG CGGGA CCAATTC GGCTG                  
     |||| ||| || || |||||| |||||||||| ||||| ||||||| |||||                  T
     GTGG AGC CC AG CTAAGT AACTACGTTC GCCCT GGTTAGG ACGAG                  
AAAAT    -   T  T  G      C          C     A       G     TGTTTGGTTATTTCCAAA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-167 Aly-MIR168a Aly-scaffold_7: 10245612-10245757 - Arabidopsis thaliana Ath-MIR168a Ath-Chr4: 10578632-10578777 +
SY-179 Aly-MIR168b Aly-scaffold_8: 2067209-2067339 + Arabidopsis thaliana Ath-MIR168a Ath-Chr4: 10578632-10578777 +
SY-536 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Arabidopsis thaliana Ath-MIR168b Ath-Chr5: 18358783-18358913 -
SY-537 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Brassica oleracea Bol-MIR168b Bol-C07: 41430765-41430906 +
SY-538 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Brassica rapa Bra-MIR168b Bra-A01: 5436066-5436205 +
SY-539 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Brassica rapa Bra-MIR168c Bra-Scaffold87669: 166114-166244 +
SY-540 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Brassica rapa Bra-MIR168d Bra-A08: 12072881-12073020 -
SY-541 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Brassica rapa Bra-MIR168f Bra-A09: 13356294-13356434 -
SY-542 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Capsella rubella Cru-MIR168a Cru-scaffold_7: 8258806-8258945 -
SY-543 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Capsella rubella Cru-MIR168b Cru-scaffold_8: 1121379-1121509 +
SY-544 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Eutrema salsugineum Esa-MIR168b Esa-scaffold_1: 8872731-8872872 -
SY-545 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Eutrema salsugineum Esa-MIR168c Esa-scaffold_20: 1047212-1047352 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G48410.2 3.0 NA 2 (2)
AT2G03430.1 4.0 NA 2 (1)
AT5G51070.1 4.5 NA 2 (3)

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference