Ath-MIR169d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        AATT      T     T         AT         ATGT      CA    TTA
    GAAA    AAAGAA GAGAT GAGCCAAGG  GACTTGCCG    TATCAA  AATC   
    ||||    |||||| ||||| |||||||||  |||||||||    ||||||  ||||    
    TTTT    TTTCTT CTTTG CTCGGTTCC  TTGAACGGC    GTGGTT  TTAG   
TAAC    --CT      C     T         AG         --CT      --    TCA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-195 Aly-MIR169d Aly-scaffold_1: 28725960-28726078 - Arabidopsis thaliana Ath-MIR169d Ath-Chr1: 20039479-20039596 -
SY-562 Ath-MIR169d Ath-Chr1: 20039479-20039596 - Capsella rubella Cru-MIR169a Cru-scaffold_1: 18887754-18887872 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT5G45680.1 4.5 NA 0 (3)
AT3G05690.1 1.5 2 2 (2)
AT5G06510.1 1.5 2 2 (2)
AT1G70700.1 3.5 2 2 (2)
AT3G24140.1 4.5 NA 2 (3)
AT2G03690.1 NA NA 2 (1)
AT2G39360.1 NA NA 2 (1)

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference