PmiREN: Plant microRNA Encyclopedia

Ath-MIR170

Basic info.

miRNA locus ID
Ath-MIR170

miRNA locus accession
PmiREN000688

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr5 26411574 26411675 -

Comments
A member of family MIR170

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TTC        TCC  CT         C       C      TCTCTTTT
      CGAGAGAG   CT  GATATTGGC TGGTTCA TCAGAT        
      ||||||||   ||  ||||||||| ||||||| ||||||         
      GCTCTCTC   GA  CTATAACTG GCCGAGT AGTCTA        
TTCGCT        -CT  CT         T       T      CTCAATCA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-222	Aly-MIR170	Aly-scaffold_8: 22899757-22899857 +	Arabidopsis thaliana	Ath-MIR170	Ath-Chr5: 26411574-26411675 -
SY-581	Ath-MIR170	Ath-Chr5: 26411574-26411675 -	Eutrema salsugineum	Esa-MIR171a	Esa-scaffold_6: 36758-36858 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT2G45160.1	1.0	NA	0 (1)
AT4G00150.1	1.0	NA	0 (3)
AT1G22640.1	4.5	NA	2 (3)
AT3G60630.1	4.5	NA	2 (4)
AT4G18030.1	5.0	NA	2 (2)
AT1G02910.1	NA	NA	2 (2)

Mature miRNA conservation

Link

Reference

>Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiol, 2013