Ath-MIR171a

Basic info.

• miRNA locus ID
• Ath-MIR171a

• miRNA locus accession
• PmiREN000689

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr3  19073432  19073561  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   GCAT        CC  TT         C       C      CT ACCTGACCACACAC   GA
       GAGAGAGT  CT  GATATTGGC TGGTTCA TCAGAT  T              GTA  
       ||||||||  ||  ||||||||| ||||||| ||||||  |              |||   
       CTCTCTCA  GA  CTATAACCG GCCGAGT AGTCTA  A              CAT  
ATCTCTG        -T  CT         C       T      TT GATCTCTCTTATTA   AT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018
• >Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017
• >Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet, 2014
• >Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiol, 2013
• >Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA, 2008
• >Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 2004
• >Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science, 2002