Ath-MIR173

Basic info.

• miRNA locus ID
• Ath-MIR173

• miRNA locus accession
• PmiREN000697

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr3  8236141  8236268  +

• Comments
• A member of family MIR173

• Confidence level
• 

Secondary strurture and sequence

   T  GTT  T  T     A            G      A      T  TCAAAAA G  GT  TT
    GT   GG GA TAAGT CTTTCGCTTGCA AGAGAA TCACAG GG       A TT  AG  
    ||   || || ||||| |||||||||||| |||||| |||||| ||       | ||  ||   
    CA   CC CT GTTCG GAAAGCGAATGT TCTCTT AGTGTC CC       T AA  TC  
TATT  AAT  -  C     A            G      -      T  -TTTCTC G  AT  TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs. Front Plant Sci, 2019
• >A Short Open Reading Frame Encompassing the MicroRNA173 Target Site Plays a Role in trans-Acting Small Interfering RNA Biogenesis. Plant Physiol, 2016
• >Global small RNA analysis in fast-growing Arabidopsis thaliana with elevated concentrations of ATP and sugars. BMC Genomics, 2014
• >Mechanistic insights into small RNA recognition and modification by the HEN1 methyltransferase. Biochem J, 2013
• >MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots. Plant Cell, 2013
• >MIGS: miRNA-induced gene silencing. Plant J, 2012
• >Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol, 2010
• >Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Rep, 2009
• >Artificial trans-acting siRNAs confer consistent and effective gene silencing. Plant Physiol, 2008
• >AGO1-miR173 complex initiates phased siRNA formation in plants. Proc Natl Acad Sci, 2008
• >microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell, 2005