Ath-MIR319b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TGTTGAGTTGGT ----        ----------                 CT       TAATAT    -         -GA      AC        C  AA     A    AA   TT
            G    GAGGAAGA          GAGCTTTCTTCGGTCCA  CATGGAG      GTGA GATTTAATT   CTCTCG  TCATTCAT CA  TACCA ATGA  GAA  
            |    ||||||||          |||||||||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||   
            T    CTCTTTCT          CTCGAGGGAAGTCAGGT  GTATCTC      CACT CTGAGTTAA   GAGAGC  AGTAAGTA GT  ATGGT TACT  CTT  
             GAGA        ATTTTTATCC                 TC       ----TT    T         ACA      GT        A  AA     A    --   GT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-270 Aly-MIR319b Aly-scaffold_7: 21388808-21389017 + Arabidopsis thaliana Ath-MIR319b Ath-Chr5: 16660449-16660658 -
SY-621 Ath-MIR319b Ath-Chr5: 16660449-16660658 - Brassica rapa Bra-MIR319b Bra-A04: 10646026-10646235 -
SY-622 Ath-MIR319b Ath-Chr5: 16660449-16660658 - Brassica rapa Bra-MIR319e Bra-A07: 15294081-15294290 -
SY-623 Ath-MIR319b Ath-Chr5: 16660449-16660658 - Capsella rubella Cru-MIR319c Cru-scaffold_7: 15441258-15441467 +
SY-624 Ath-MIR319b Ath-Chr5: 16660449-16660658 - Eutrema salsugineum Esa-MIR319b Esa-scaffold_14: 2396373-2396581 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G30210.1 2.5 2 0 (2)
AT4G18390.1 2.5 2 0 (1)
AT2G31070.1 2.5 NA 2 (2)
AT3G15030.1 2.5 NA 2 (1)
AT3G06450.1 3.5 NA 2 (1)
AT1G64355.1 NA 2 2 (3)
AT1G69220.1 NA NA 2 (2)
AT4G39850.3 NA NA 2 (2)
AT5G03340.1 NA NA 2 (1)
AT5G18065.1 NA NA 2 (1)
AT5G19540.1 NA NA 2 (1)
AT2G26950.1 1.5 2 NA
AT3G11440.1 1.5 NA NA
AT5G06100.2 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference