Ath-MIR319c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAAATAGA    TAT        A              T        GAAA      A  G           G   AC    C   C  AA    C     AG   AACG
          TAGA   AGAAGGAG TTCTTTCAGTCCAG CATGGATA    AAGAAG GG TAGAAATATCT CCG  TCAT CAT CA  CACT GTGGT  AGA    
          ||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  |||    A
          ATCT   TCTTCCTC AGGGAAGTCAGGTT GTGTCTAT    TTCTTC CT GTTTTTATAGA GGC  AGTA GTG GT  GTGA CGCCA  TTT    
ACTTTTAAAC    TTT        G              T        ----      -  A           G   GT    A   T  CA    -     AA   AAAT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-382 Aly-MIRN123a Aly-scaffold_4: 18166631-18166757 + Arabidopsis thaliana Ath-MIR319c Ath-Chr2: 17029693-17029909 +
SY-384 Aly-MIRN123b Aly-scaffold_4: 19899206-19899332 + Arabidopsis thaliana Ath-MIR319c Ath-Chr2: 17029693-17029909 +
SY-625 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Brassica rapa Bra-MIR319f Bra-A03: 10438625-10438847 +
SY-626 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Brassica rapa Bra-MIR319g Bra-A04: 19600737-19600957 +
SY-627 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Brassica rapa Bra-MIR319h Bra-A05: 1061830-1062044 +
SY-628 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Capsella rubella Cru-MIR319a Cru-scaffold_4: 12176944-12177161 +
SY-629 Ath-MIR319c Ath-Chr2: 17029693-17029909 + Eutrema salsugineum Esa-MIR319a Esa-scaffold_10: 10950425-10950647 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT3G11440.1 2.5 NA 0 (2)
AT5G06100.2 2.5 NA 2 (1)
AT1G30210.1 3.5 1 2 (3)
AT1G52510.1 NA NA 2 (1)
AT2G17580.1 NA NA 2 (2)
AT3G10770.1 NA 2 2 (3)
AT3G45140.1 NA NA 2 (3)
AT3G60130.1 NA NA 2 (2)
AT4G37830.1 NA NA 2 (3)
AT5G18065.1 NA NA 2 (1)
AT5G19540.1 NA NA 2 (3)
AT5G37600.1 NA NA 2 (3)
AT5G65670.1 NA NA 2 (3)
AT2G26950.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference