Ath-MIR390b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        AGTA     AT      AA         G           ------   CTCACCAGTGCTGTATGT
      GT    GAGAA  AGCTAT  AGCTCAGGA GGATAGCGCCA      TGG                  
      ||    |||||  ||||||  ||||||||| |||||||||||      |||                   
      CG    TTCTT  TCGATA  TTGAGTCCT CCTATCGCGGT      TAT                  
TATATT  ----     CT      CC         A           TGTCTA   GTACATGCGTATATGTTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-285 Aly-MIR390b Aly-scaffold_8: 18617958-18618091 + Arabidopsis thaliana Ath-MIR390b Ath-Chr5: 23636941-23637074 +
SY-637 Ath-MIR390b Ath-Chr5: 23636941-23637074 + Capsella rubella Cru-MIR390b Cru-scaffold_8: 9836443-9836569 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT2G33730.1 4.5 NA 0 (2)
AT5G05570.1 3.5 NA 2 (1)
AT1G79970.1 4.0 NA 2 (2)
AT1G14510.1 4.5 NA 2 (2)
AT1G12460.1 5.0 NA 2 (1)
AT1G55340.1 NA NA 2 (1)
AT3G07200.1 NA NA 2 (1)
AT3G10060.1 NA NA 2 (1)
AT3G14390.1 NA NA 2 (1)
AT4G05150.1 NA NA 2 (2)
AT4G13430.1 NA NA 2 (3)

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference