Ath-MIR391

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AAC    A   -   AT     T  C          G  C      -----CT    T
    TGCA ATA AAG  TTGCT CG AGGAGAGATA CG CATCAC       CTTC 
    |||| ||| |||  ||||| || |||||||||| || ||||||       |||| A
    ACGT TAT TTC  AACGA GC TCCTCTCTAT GC GTGGTG       GAAG 
TTCT    A   A   CT     T  A          G  A      ATCAATT    A

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-286 Aly-MIR391 Aly-scaffold_8: 19524565-19524676 + Arabidopsis thaliana Ath-MIR391 Ath-Chr5: 24293140-24293251 +
SY-638 Ath-MIR391 Ath-Chr5: 24293140-24293251 + Brassica rapa Bra-MIR391a Bra-A10: 12427630-12427742 +
SY-639 Ath-MIR391 Ath-Chr5: 24293140-24293251 + Brassica rapa Bra-MIR391b Bra-A03: 4909142-4909256 -
SY-640 Ath-MIR391 Ath-Chr5: 24293140-24293251 + Capsella rubella Cru-MIR391 Cru-scaffold_8: 10546398-10546502 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G17745.2 NA NA 2 (2)
AT1G18250.2 NA NA 2 (1)
AT4G37550.1 NA NA 2 (2)
AT5G26850.1 NA NA 2 (1)
AT1G50990.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference