Ath-MIR394a

Basic info.

• miRNA locus ID
• Ath-MIR394a

• miRNA locus accession
• PmiREN000714

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr1  7058187  7058318  +

• Comments
• A member of family MIR394

• Confidence level
• 

Secondary strurture and sequence

    TT    T    -  A   -      TTC               -A     -AT          AT
 AGA  TTCT ACAG TC TCT TTGGCA   TGTCCACCTCCTTCT  TACAT   ATGCATGTGT  
 |||  |||| |||| || ||| ||||||   |||||||||||||||  |||||   ||||||||||   
 TCT  GGGA TGTC AG AGA AACCGT   ATGGGTGGAGGAAGA  GTGTG   TGCGTATATA  
T   TC    T    T  -   T      CAT               AA     CTT          TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >miR394 Acts as a Negative Regulator of Arabidopsis Resistance to B. cinerea Infection by Targeting LCR. Front Plant Sci, 2018
• >Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote. Dev Biol, 2017
• >Proteomic Identification of Putative MicroRNA394 Target Genes in Arabidopsis thaliana Identifies Major Latex Protein Family Members Critical for Normal Development. Mol Cell Proteomics, 2016
• >A protodermal miR394 signal defines a region of stem cell competence in the Arabidopsis shoot meristem. Dev Cell, 2013
• >Overexpression of gma-MIR394a confers tolerance to drought in transgenic Arabidopsis thaliana. Biochem Biophys Res Commun, 2012