Ath-MIR398b

Basic info.

• miRNA locus ID
• Ath-MIR398b

• miRNA locus accession
• PmiREN000727

• Organism
• Arabidopsis thaliana

• Genomic location
• Ath-Chr5  4691014  4691147  +

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

G A     ---T   T    A     T    A          C   T   CAAC       ---      C
 A GGTAG    GGA CTCG CAGGG TGAT TGAGAACACA GAG AAT    GGCTGTA   ATGACG 
 | |||||    ||| |||| ||||| |||| |||||||||| ||| |||    |||||||   |||||| T
 T CCATC    TCT GAGT GTCCC ACTG ACTCTTGTGT CTT TTG    TCGACAT   TACTGC 
  G     TCTT   C    C     C    G          A   -   -CTC       TGT      A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3174
• Chromosome: Ath-Chr5
• Cluster start: 4691014
• Cluster end: 4694818

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >SQUAMOSA promoter-binding protein-like 7 mediates copper deficiency response in the presence of high nitrogen in Arabidopsis thaliana. Plant Cell Rep, 2019
• >The mitochondrial copper chaperone COX19 influences copper and iron homeostasis in arabidopsis. Plant Mol Biol, 2019
• >SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis. J Plant Physiol, 2018
• >miR398 and miR395 are involved in response to SO2 stress in Arabidopsis thaliana. Ecotoxicology, 2017
• >MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis. Front Plant Sci, 2017
• >Genome-Wide Profiling of Small RNAs and Degradome Revealed Conserved Regulations of miRNAs on Auxin-Responsive Genes during Fruit Enlargement in Peaches. Int J Mol Sci, 2017
• >Excess boron responsive regulations of antioxidative mechanism at physio-biochemical and molecular levels in Arabidopsis thaliana. Plant Physiol Biochem, 2016
• >Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues. BMC Plant Biol, 2015
• >Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis. Sci Rep, 2015
• >Involvement of microRNA in copper deficiency-induced repression of chloroplastic CuZn-superoxide dismutase genes in the moss Physcomitrella patens. Plant Cell Physiol, 2013
• >The strength of the miR398-Csd2-CCS1 regulon is subject to natural variation in Arabidopsis thaliana. FEBS Lett, 2012
• >Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Sci, 2012
• >Plants contain two SCO proteins that are differentially involved in cytochrome c oxidase function and copper and redox homeostasis. J Exp Bot, 2011
• >Comparative transcriptome analysis of green/white variegated sectors in Arabidopsis yellow variegated2: responses to oxidative and other stresses in white sectors. J Exp Bot, 2010
• >SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis. Plant Cell, 2009
• >Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana. Plant Mol Biol, 2009
• >Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol, 2009
• >How do plants respond to copper deficiency? Plant Signal Behav, 2008
• >Regulation of copper homeostasis by micro-RNA in Arabidopsis. J Biol Chem, 2007
• >Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell, 2006