Ath-MIR398c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TAA     ---T   T    A     T    A         -----     CAATCAAC    A    ---    C
   GGTAG    GGA CTCG CAGGG TGAT TGAGAACAC     ACGAG        GGCT TAAC   GACG 
   |||||    ||| |||| ||||| |||| |||||||||     |||||        |||| ||||   |||| T
   CCATC    TCT GAGT GTCCC ACTG ACTCTTGTG     TGCTC        TCGA ATTG   CTGC 
 TG     TCTT   C    C     C    G         TACTT     --------    C    TTA    A

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Ath-MIR398b ,   Ath-MIR398c PmiREN000727, PmiREN000728 Ath-Chr5 + 4691014 4694818

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT1G08830.1 4.0 NA 0 (1)
AT3G15640.1 4.0 2 0 (1)
AT5G20230.1 NA NA 0 (3)
AT4G25130.1 NA NA 2 (1)
AT5G21090.1 NA NA 2 (3)
AT5G14550.1 0.0 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference