PmiREN: Plant microRNA Encyclopedia

Ath-MIR403

Basic info.

miRNA locus ID
Ath-MIR403

miRNA locus accession
PmiREN000736

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr2 19415056 19415195 +

Comments
A member of family MIR403

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CATTA      T  T     AT    T    T                 -  TTTATGTAAGAGATTCTT
       GAAGAG CG ATTAC  GTTT GTGC TGAATCTAATTCAACAG GC                  
       |||||| || |||||  |||| |||| ||||||||||||||||| ||                   
       CTTTTC GT TAATG  CAAA CACG ACTTAGATTAGGTTGTT TT                  
TTTTTAG      T  C     CT    -    C                 G  TCTAATATCCTTAACAAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-360	Aly-MIR403a	Aly-scaffold_4: 22991764-22991898 +	Arabidopsis thaliana	Ath-MIR403	Ath-Chr2: 19415056-19415195 +
SY-704	Ath-MIR403	Ath-Chr2: 19415056-19415195 +	Brassica rapa	Bra-MIR403	Bra-A05: 306441-306559 -
SY-705	Ath-MIR403	Ath-Chr2: 19415056-19415195 +	Capsella rubella	Cru-MIR403	Cru-scaffold_4: 14757166-14757292 +
SY-706	Ath-MIR403	Ath-Chr2: 19415056-19415195 +	Eutrema salsugineum	Esa-MIR403	Esa-scaffold_22: 1579827-1579948 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G31280.1	0.0	NA	0 (4)
AT2G16950.1	5.0	NA	2 (3)
AT1G03060.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Ath-MIR403

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