PmiREN: Plant microRNA Encyclopedia

Ath-MIR825

Basic info.

miRNA locus ID
Ath-MIR825

miRNA locus accession
PmiREN000792

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr2 11159693 11159814 +

Comments
A member of family MIR825

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGTTGATTC        C     A     AG  C  A     T     AA     CTTAG
           CATCGACT GTTCA GCACC  CT GA GAAGC TAGCT  TTTAT     
           |||||||| ||||| |||||  || || ||||| |||||  |||||     A
           GTAGTTGA CAAGT CGTGG  GA CT CTTCG ATCGA  AAGTA     
TAGTTTTATAT        A     A     AA  A  -     T     AA     ATAAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-371	Aly-MIR825	Aly-scaffold_4: 6095665-6095792 +	Arabidopsis thaliana	Ath-MIR825	Ath-Chr2: 11159693-11159814 +
SY-710	Ath-MIR825	Ath-Chr2: 11159693-11159814 +	Capsella rubella	Cru-MIR825	Cru-scaffold_4: 3064090-3064213 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G13570.1	3.5	NA	2 (1)
AT2G25430.1	3.5	NA	2 (3)
AT5G47435.2	3.5	NA	2 (2)
AT1G57770.1	NA	2	2 (1)
AT1G73680.2	NA	NA	2 (2)
AT3G48195.1	NA	NA	2 (3)
AT5G11190.1	NA	NA	2 (2)

Mature miRNA conservation

Link

Reference

No reference

Ath-MIR825

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