PmiREN: Plant microRNA Encyclopedia

Ath-MIR834

Basic info.

miRNA locus ID
Ath-MIR834

miRNA locus accession
PmiREN000799

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr5 2641457 2641641 -

Comments
A member of family MIR834

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTTCAGCGACAGCCAAAATC         T       G   A     A    TCCTTTTAACCGTT     CACC        G ---    -CA  A  AA
                      ACCACCGCT CTGCTAC AAC TGTTA GCCA              GCTGC    ACTATTAC G   CCAT   CA GA  
                      ||||||||| ||||||| ||| ||||| ||||              |||||    |||||||| |   ||||   || ||   
                      TGGTGGCGA GACGATG TTG ACAGT TGGT              CGACG    TGATAGTG C   GGTG   GT CT  
ACGGCGAGTGCGATAGCCGTAA         T       G   C     A    --------------     ---A        G AAA    AAC  A  TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3172
Chromosome: Ath-Chr5
Cluster start: 2634916
Cluster end: 2641641

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Ath-MIR162a , Ath-MIR834	PmiREN000654, PmiREN000799	Ath-Chr5	-	2634916	2641641

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G72040.1	3.0	NA	2 (3)
AT3G11600.1	3.0	NA	2 (2)
AT3G14310.1	3.0	NA	2 (4)
AT5G42190.1	3.5	NA	2 (4)
AT1G14900.1	4.0	NA	2 (3)
AT2G39720.1	4.5	2	2 (3)
AT3G02750.3	4.5	NA	2 (1)
AT2G22840.1	5.0	NA	2 (3)
AT3G48060.1	5.0	NA	2 (1)
AT4G15790.1	5.0	NA	2 (3)
AT1G04080.3	NA	NA	2 (2)
AT1G04990.2	NA	NA	2 (3)
AT1G14710.1	NA	NA	2 (3)
AT1G14990.2	NA	NA	2 (2)
AT1G15660.1	NA	NA	2 (1)
AT1G15690.1	NA	NA	2 (3)
AT1G20020.1	NA	2	2 (3)
AT1G24530.1	NA	NA	2 (1)
AT1G26740.1	NA	NA	2 (1)
AT1G29900.1	NA	NA	2 (3)
AT1G35710.1	NA	NA	2 (1)
AT1G43890.1	NA	NA	2 (2)
AT1G48860.1	NA	NA	2 (3)
AT1G54040.2	NA	2	2 (3)
AT1G60800.1	NA	NA	2 (2)
AT1G79840.2	NA	NA	2 (1)
AT2G01470.1	NA	NA	2 (3)
AT2G05520.1	NA	2	2 (3)
AT2G12462.1	NA	NA	2 (1)
AT2G21390.1	NA	NA	2 (2)
AT2G28000.1	NA	NA	2 (3)
AT2G36050.1	NA	NA	2 (3)
AT2G40380.1	NA	NA	2 (2)
AT3G06868.1	NA	NA	2 (1)
AT3G10530.1	NA	NA	2 (2)
AT3G11450.1	NA	NA	2 (2)
AT3G27260.1	NA	NA	2 (2)
AT3G48990.1	NA	NA	2 (3)
AT3G57280.1	NA	NA	2 (2)
AT3G59760.1	NA	NA	2 (3)
AT4G00810.1	NA	NA	2 (4)
AT4G11830.2	NA	NA	2 (1)
AT4G18020.1	NA	NA	2 (3)
AT4G19540.1	NA	NA	2 (3)
AT4G25630.1	NA	NA	2 (3)
AT4G29060.1	NA	NA	2 (3)
AT4G33640.1	NA	NA	2 (3)
AT4G38520.1	NA	NA	2 (3)
AT5G13890.1	NA	NA	2 (2)
AT5G17380.1	NA	NA	2 (2)
AT5G19010.1	NA	NA	2 (3)
AT5G44060.1	NA	2	2 (3)
AT5G60170.2	NA	NA	2 (3)
AT5G60460.1	NA	NA	2 (2)
AT3G52420.1	2.0	1	4 (1)
AT5G05840.1	2.0	1	NA

Mature miRNA conservation

Link

Reference

No reference

Ath-MIR834

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