Ath-MIR162a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     ----    T A   T       G    C    C        C   C   GAAC     A
GAAGA    AGAG G GAG CGCTGGA GCAG GGTT ATCGATCT TTC TGT    ACATT 
|||||    |||| | ||| ||||||| |||| |||| |||||||| ||| |||    ||||| A
TTTCT    TCTC C TTT GCGACCT CGTC CCAA TAGCTAGA AAG ACG    TGTAA 
     ATGT    - G   -       A    T    A        T   T   AAAA     A

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Ath-MIR162a ,   Ath-MIR834 PmiREN000654, PmiREN000799 Ath-Chr5 - 2634916 2641641

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-82 Aly-MIR162b Aly-scaffold_6: 9808812-9808933 - Arabidopsis thaliana Ath-MIR162a Ath-Chr5: 2634916-2635038 -
SY-464 Ath-MIR162a Ath-Chr5: 2634916-2635038 - Arabidopsis thaliana Ath-MIR162b Ath-Chr5: 7740590-7740715 -
SY-465 Ath-MIR162a Ath-Chr5: 2634916-2635038 - Brassica oleracea Bol-MIR162 Bol-C07: 36847915-36848047 +
SY-466 Ath-MIR162a Ath-Chr5: 2634916-2635038 - Brassica rapa Bra-MIR162c Bra-A02: 1323891-1324037 -
SY-467 Ath-MIR162a Ath-Chr5: 2634916-2635038 - Eutrema salsugineum Esa-MIR162a Esa-scaffold_2: 2641937-2642077 -
SY-468 Ath-MIR162a Ath-Chr5: 2634916-2635038 - Eutrema salsugineum Esa-MIR162b Esa-scaffold_6: 2732097-2732235 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT3G01330.1 3.0 2 0 (3)
AT1G23490.1 NA NA 2 (1)
AT3G50685.1 NA NA 2 (2)
AT3G59800.1 NA NA 2 (2)
AT4G30760.1 NA 2 2 (2)
AT5G24870.1 NA NA 2 (1)
AT2G23180.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference