Bol-MIR172a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ATCA      TT    A  C      C           A    -GA  TGA     CT       T
      GTCGTT  TTGT GG GCAGCA CATCAAGATTC CATG   AT   AAAAT  CCTAATT 
      ||||||  |||| || |||||| ||||||||||| ||||   ||   |||||  ||||||| T
      CGGCAG  AACA CT CGTCGT GTAGTTCTAAG GTAT   TA   TTTTG  GGATTAA 
ACATAT      CC    A  A      A           A    ATG  TAG     --       T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-235 Aly-MIR172b Aly-scaffold_6: 1397243-1397369 - Brassica oleracea Bol-MIR172a Bol-C02: 1546875-1547006 -
SY-594 Ath-MIR172b Ath-Chr5: 1188191-1188317 - Brassica oleracea Bol-MIR172a Bol-C02: 1546875-1547006 -
SY-834 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica oleracea Bol-MIR172b Bol-C09: 39300315-39300447 +
SY-835 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica oleracea Bol-MIR172c Bol-C03: 514956-515091 -
SY-836 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica rapa Bra-MIR172a Bra-A02: 681031-681163 -
SY-837 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica rapa Bra-MIR172b Bra-A10: 19091563-19091697 +
SY-838 Bol-MIR172a Bol-C02: 1546875-1547006 - Brassica rapa Bra-MIR172e Bra-A03: 690626-690761 -
SY-839 Bol-MIR172a Bol-C02: 1546875-1547006 - Capsella rubella Cru-MIR172d Cru-scaffold_6: 1174066-1174194 -
SY-840 Bol-MIR172a Bol-C02: 1546875-1547006 - Eutrema salsugineum Esa-MIR172a Esa-scaffold_2: 1159895-1160021 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol008371 0.5 0 NA
Bol008932 0.5 0 NA
Bol017251 0.5 0 NA
Bol018627 0.5 0 NA
Bol028934 0.5 0 NA
Bol032944 0.5 0 NA
Bol015478 1.5 0 NA
Bol016216 1.5 NA NA
Bol027237 1.5 1 NA
Bol044334 1.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference